HUDSEN:352

LRRTM1 leucine rich repeat transmembrane neuronal 1(AY358310)
CS CS15
in situ hybridisation

Data Images
HUDSEN:352 HUDSEN:352 HUDSEN:352
cs16_N733_28 cs16_N733_44 cs16_N733_44
Expression pattern clarity: two stars
Find spatially similar expression patterns: Find spatially similar patterns
Notes
The original images, scanned at high resolution, are available at http://nbb-slidepath.ncl.ac.uk username: hudsen password: See1Tuesday
Detection Reagent
Type:in situ hybridisation probe
Identifier:LRRTM1
Entity Detected:LRRTM1, leucine rich repeat transmembrane neuronal 1(AY358310)
Sequence:nt 1158 - nt 1578 of NM_178839
Probe generated from:genomic
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:human
Carnegie Stage:CS15
Preparation:section
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
midbrain
strong strong
not applicable
hindbrain
strong strong
not applicable
ear
weak weak
not applicable
dorsal root ganglion
strong strong
not applicable
facio-acoustic vii-viii complex
weak weak
not applicable
trigeminal v ganglion
weak weak
not applicable
diencephalon
strong strong
not applicable
Spatial Annotation:
HUDSEN:352HUDSEN:352HUDSEN:352HUDSEN:352
3D mapping3D mapping3D mappingspatial mapping

Annotation colour key:   strong strong       moderate moderate     weak weak         possible possible     not detected not detected
Find spatially similar expression patterns: Find spatially similar patterns
Morphological match to the template: two stars
Spatial mapping approved by: Submitter + HUDSEN Editor
Auto Text Annotation:The chart shows an automatically generated list of tissues that either express or do not express this gene, as based on the spatial annotation above. The colours represent the approximate percentage of the tissue that expresses the gene at that level. Note that the percentages only refer to the part of the tissue that was spatially annotated (e.g. in many cases, just one or two sections) and not necessarily the whole tissue.

percent
0 10 20 30 40 50 60 70 80 90
organ system
strongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongweakweakweaknot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detected
central nervous system
strongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongweaknot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detected
human
strongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongweaknot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detected
nervous system
strongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongweakweaknot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detected
embryo
strongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongweaknot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detected
spinal peripheral nervous system
strongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweaknot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detected
peripheral nervous system
strongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweaknot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detected
dorsal root ganglion
strongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweaknot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detected
spinal ganglion
strongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongstrongweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweaknot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detected
ear
weakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweaknot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detected
sensory organ
weakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweakweaknot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detectednot detected


Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Principal investigator:Dr. Clyde Francks, Wellcome Trust Centre for Human Genetics, University of Oxford Roosevelt Drive, Oxford, UK OX3 7BN
Submitted by:Yuzhu Cheng, Insitute of Human Genetics, Newcastle University, International Centre For Life, Central Parkway, Newcastle upon Tyne, UK NE1 3BZ
Experiment type:non-screen
Acknowledgments:The human embryonic material was provided by the Joint MRC-Wellcome Trust Human Developmental Biology Resource (http://www.hdbr.org) at the IHG, Newcastle-upon-Tyne, UK
Links: EMAGE same gene
  Allen Brain Atlas same gene
  BioGPS same gene

The HuDSeN Gene Expression Spatial database currently contains data from CS12 to CS23. We are in the process of upgrading the database to include fetal gene expression patterns spatially mapped into 3D models. In the meantime the fetal gene expression images are available to view here.


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All Rights Reserved.